STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3029Aminotransferase; Family membership. (472 aa)    
Predicted Functional Partners:
dapE3
Succinyl-diaminopimelate desuccinylase; Family membership.
 
  
 0.917
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; High confidence in function and specificity; Belongs to the transferase hexapeptide repeat family.
    
 0.915
argD
Acetylornithine aminotransferase; High confidence in function and specificity; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.914
sce1220
Similar to Xaa-His dipeptidase; Family membership.
    
 0.904
dapE2
Succinyl-diaminopimelate desuccinylase.
    
 0.904
sce2981
Hypothetical protein.
  
     0.737
sce9261
Aspartate kinase; Family membership; Belongs to the aspartokinase family.
 
 0.698
sce3030
Hypothetical protein predicted by Glimmer/Critica.
       0.645
lysC1
Aspartate kinase; High confidence in function and specificity; Belongs to the aspartokinase family.
  
 0.586
lysC2
Aspartate kinase; High confidence in function and specificity; Belongs to the aspartokinase family.
  
 0.586
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.