Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xynA1Endo-1,4-beta-xylanase; High confidence in function and specificity. (467 aa)    
Predicted Functional Partners:
manB
Mannan endo-1,4-beta-mannosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.807
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.700
sce8904
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
   
 0.676
sce3304
Put. Xylosidase/arabinosidase.
 
   
 0.650
xynA2
XynA2 protein; High confidence in function and specificity.
 
   
 0.649
sce6693
O-Glycosyl hydrolase; Specificity unclear.
 
   
 0.647
xynB2
Beta-xylanase.
 
   
 0.641
xynB3
Endo-1,4-beta-xylanase; Family membership.
 
   
 0.640
sce3318
Put. Endoglucanase; Family membership.
 
   
 0.634
sce1955
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
   
 0.630
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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