Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3043Hypothetical protein predicted by Glimmer/Critica. (422 aa)    
Predicted Functional Partners:
sce3042
Hypothetical protein predicted by Glimmer/Critica.
       0.675
sce2646
Oxidoreductase; Specificity unclear.
  
 
 0.541
sce6919
Hypothetical protein predicted by Glimmer/Critica.
  
     0.485
sce3370
Putative membrane protein; Specificity unclear.
  
    0.461
sce0129
Hypothetical protein.
  
    0.459
sce3315
Hypothetical conserved secreted protein.
  
    0.458
sce1022
Hypothetical protein.
  
     0.453
sce4594
Putative secreted protein.
  
    0.452
sce1499
Putative secreted protein.
  
    0.451
sce5734
Putative protein, similar to esterases.
  
     0.451
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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