STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauD2TauD2 protein; High confidence in function and specificity. (319 aa)    
Predicted Functional Partners:
sce1416
ABC transport system substrate-binding protein; Family membership.
 
    0.758
sce4103
ABC transporter, periplasmic substrate-binding protein; Family membership.
 
    0.733
ssuE
FMN reductase; High confidence in function and specificity.
  
    0.639
tam1
Trans-aconitate 2-methyltransferase; Family membership.
 
     0.607
sce2757
ABC transporter, substrate binding protein; Family membership.
 
    0.605
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
  
 0.590
sce1321
ABC transporter substrate-binding protein; Specificity unclear.
 
    0.555
astR
Sulfate ester binding protein (ABC superfamily,peri_bind).
 
    0.541
sce7494
Permease of the major facilitator superfamily; Specificity unclear.
  
     0.540
coxB
Probable cytochrome c precursor.
       0.539
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.