STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3052Glycoside hydrolase family 2; Family membership; Belongs to the glycosyl hydrolase 2 family. (636 aa)    
Predicted Functional Partners:
sce3055
Hypothetical protein with NDP-sugar oxidoreductase domain; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
   
 0.839
sce3053
Glycosyltransferase; Function unclear.
 
     0.833
galK
Galactokinase; High confidence in function and specificity; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.767
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
 
   
 0.694
sce4168
Hypothetical protein.
  
    0.656
sce6225
Hypothetical protein; No COG number.
 
   
 0.616
sce8130
Selenocysteine lyase / isopenicillin N epimerase; Family membership.
  
     0.491
galM2
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.481
sce3057
Multiple sugar transport system substrate-binding protein; Family membership.
 
     0.427
sce3051
Putative secreted protein.
       0.420
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.