Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3058Sugar ABC transporter, permease protein; Specificity unclear. (296 aa)    
Predicted Functional Partners:
sce3057
Multiple sugar transport system substrate-binding protein; Family membership.
 
 0.998
sce3056
Put. Multiple sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.992
sce3059
Sugar ABC transporter, permease protein; Family membership.
 
 0.990
sce7777
Put. Maltose permease; Family membership.
 
 0.989
sce7779
ABC-type sugar transport systems ATPase component; Family membership; Belongs to the ABC transporter superfamily.
 
 
 0.968
sce9263
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.968
thuG
Trehalose/maltose transport system, permease protein; High confidence in function and specificity.
 
 0.959
sce9266
Put. ABC transporter sugar permease; Specificity unclear.
 
 0.955
sce9264
Put. Extracellular solute-binding protein; Specificity unclear.
 
 
 0.950
sce7778
Maltose/maltodextrin transport permease homologue; Family membership.
 
 
0.948
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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