Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sce3078Hydrolases acting on phosphorous-containinganhydrides; Family membership. (380 aa)    
Predicted Functional Partners:
sce2817
Hypothetical protein.
 
 
   0.787
sce3077
Hypothetical protein predicted by Glimmer/Critica.
       0.776
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
    0.643
folE
Putative GTP cyclohydrolase I; Belongs to the GTP cyclohydrolase I family.
  
  
 0.632
folB
FolB protein; Family membership.
  
  
 0.584
sce7570
Folic acid synthesis protein; Family membership.
  
  
 0.583
folP
Dihydropteroate synthase; Family membership.
  
  
 0.583
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
    0.579
sce4204
Geranyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
 
    0.532
guaA1
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.456
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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