STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3087Hypothetical protein. (442 aa)    
Predicted Functional Partners:
pgm3
Pgm3 protein; High confidence in function and specificity.
  
 0.955
glgP
Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
 
 0.935
galE1
UDP-glucose 4-epimerase; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.926
algC
AlgC protein; High confidence in function and specificity.
  
 0.925
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
   
 
 0.918
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
   
 
 0.915
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
   
 
 0.915
sce4868
Hexose-1-phosphate nucleotidyltransferase; High confidence in function and specificity.
    
 0.909
glgC1
Glucose-1-phosphate adenylyltransferase; High confidence in function and specificity; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
     
 0.905
glgC2
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
     
 0.905
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.