STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3090O-methyltransferase-related protein. (260 aa)    
Predicted Functional Partners:
sce0977
Hypothetical protein; FOG: TPR repeat.
  
     0.573
sce0856
Tetratricopeptide repeat protein.
  
     0.542
sce8447
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
  
     0.524
sce6466
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
  
     0.510
sce0958
Hypothetical protein predicted by Glimmer/Critica.
  
     0.509
sce2046
Hypothetical protein.
  
     0.509
sce7132
Putative membrane protein.
  
     0.508
sce7985
Hypothetical protein.
  
     0.496
sce7783
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
  
     0.492
sce4449
Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.484
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.