STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3101ABC transporter, nucleotide binding/ATPase protein; Specificity unclear. (512 aa)    
Predicted Functional Partners:
sce3100
Sugar transport system permease; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.995
sce3102
ABC-type sugar transport system, periplasmic component; Specificity unclear.
 
 0.995
rbsC4
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.984
sce3324
Transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.979
rbsC2
Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
 0.977
rbsC3
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 0.976
sce2222
Sugar ABC transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 0.886
sce2223
Put. Sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.882
sce3305
Put. Sugar transport system permease; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.848
xylH
D-xylose ABC transporter, permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
  
 0.832
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.