STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3102ABC-type sugar transport system, periplasmic component; Specificity unclear. (339 aa)    
Predicted Functional Partners:
sce3101
ABC transporter, nucleotide binding/ATPase protein; Specificity unclear.
 
 0.995
rbsB2
Ribose transporter, periplasmic binding protein; High confidence in function and specificity.
  
  
  0.974
sce1402
Sugar-binding protein; Specificity unclear.
 
  
  0.970
sce3100
Sugar transport system permease; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.968
sce3322
Put. D-ribose-binding periplasmic protein; Specificity unclear.
  
  
 
0.928
sce3365
Putative sugar ABC transporter.
  
  
 
0.928
rbsB1
Ribose transporter, periplasmic binding protein; High confidence in function and specificity.
  
  
 
0.914
rbsC2
Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.881
rbsC3
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.880
rbsC4
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.880
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.