Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3109Protein kinase; Family membership. (1347 aa)    
Predicted Functional Partners:
sce5244
PE_PGRS family protein; Family membership.
  
     0.700
sce7747
Putative protein phosphatase.
  
     0.685
sce0936
Hypothetical protein; Predicted phosphatase.
  
     0.669
sce9166
Hypothetical protein.
  
     0.666
chlG
Putative Octaprenyltransferase; Family membership.
  
     0.662
sce3073
Putative membrane-associated protein.
  
     0.645
sce5113
Uncharacterized protein conserved in bacteria.
  
     0.637
sce4696
Hypothetical protein.
  
     0.636
sce2903
Cytochrome c family protein.
  
     0.634
sce0937
Putative exported protein.
  
     0.606
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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