Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3178Hypothetical protein predicted by Glimmer/Critica. (1111 aa)    
Predicted Functional Partners:
sce3177
Hypothetical protein.
       0.682
gatA3
Putative amidase; Family membership; Belongs to the amidase family.
       0.659
sce3179
Putative polyketide biosynthesis enoyl-coa hydratase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.642
sce3180
Probable enoyl-CoA hydratase/isomerase; Family membership.
       0.642
sce3181
Probable Hydroxymethylglutaryl-CoA synthase.
       0.642
sce3182
Putative beta-ketoacyl synthase; Family membership; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.613
acpP2
AcpP2 protein; Family membership.
       0.613
sce3184
Hypothetical protein; Function unclear.
       0.613
cobB
Transcriptional regulatory protein, Sir2 family; Belongs to the sirtuin family. Class III subfamily.
   
   0.479
cobB-2
Hypothetical protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
   0.479
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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