Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3190Polyketide synthase; Family membership. (3628 aa)    
Predicted Functional Partners:
sce3195
Malonyl CoA-acyl carrier protein transacylase; Family membership.
 0.998
sce2387
Non-ribosomal peptide synthetase; Family membership.
 
 0.997
chiA
Putative acyltransferase/oxidoreductase; Specificity unclear.
 0.994
sce8262
Non-ribosomal peptide synthetase; Family membership.
 0.991
sce8255
Non-ribosomal peptide synthetase; Family membership.
  
 0.980
sce3189
Polyketide synthase; High confidence in function and specificity.
 
0.979
sce3179
Putative polyketide biosynthesis enoyl-coa hydratase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.978
sce8219
AMP-dependent synthetase and ligase; Belongs to the ATP-dependent AMP-binding enzyme family.
 0.977
sce6823
NRPS/PKS hybrid.
 
 
0.970
sce3192
Polyketide synthase; Family membership.
 
 
0.963
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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