Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3194MATE efflux family protein; Family membership. (458 aa)    
Predicted Functional Partners:
sce3193
Polyketide synthase; Family membership.
       0.773
sce3192
Polyketide synthase; Family membership.
  
 
 0.743
sce3195
Malonyl CoA-acyl carrier protein transacylase; Family membership.
       0.741
sce3188
Polyketide synthase; High confidence in function and specificity.
  
    0.727
sce3185
Hypothetical protein.
       0.714
fabD1
Malonyl CoA-acyl carrier protein transacylase; High confidence in function and specificity.
       0.714
asnB1
Asparagine synthetase; High confidence in function and specificity.
       0.714
sce3189
Polyketide synthase; High confidence in function and specificity.
       0.714
sce3190
Polyketide synthase; Family membership.
       0.714
sce3191
Polyketide synthase; Family membership.
       0.714
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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