Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3207Two component sensor kinase; Family membership. (814 aa)    
Predicted Functional Partners:
kdpE
Two component system transcriptional regulatory protein; High confidence in function and specificity.
  
  0.926
sce1650
Two-component response regulator; Family membership.
  
 
  0.923
kdpD
Sensor for high-affinity potassium transport system; High confidence in function and specificity.
  
  
 
0.904
sce3204
Hypothetical protein predicted.
       0.773
sce3205
Hypothetical protein.
       0.773
sce3206
Predicted subtilisin like protease.
       0.773
sce3208
Sigma-54 dependent DNA-binding response regulator; Family membership.
   
   0.773
sce3209
WD-40 repeat protein.
       0.723
sce7596
Putative two component system, histidine kinase.
  
 
   0.708
sce2554
Two-component system sensor protein; Family membership.
  
 
   0.684
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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