Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3221Protein kinase; Family membership. (1502 aa)    
Predicted Functional Partners:
sce3222
Hypothetical protein predicted by Glimmer/Critica.
 
     0.801
CAN92074.1
Pseudogene.
  
     0.656
capB
Capsule biosynthesis protein CapB, (pXO2-58).
  
     0.654
cotH
Spore coat protein H; Family membership.
  
     0.607
sce5690
FHA domain protein.
 
 
   0.586
sce7712
Hypothetical protein; Predicted phosphohydrolases.
  
   
 0.539
sce1942
Hypothetical protein predicted by Glimmer/Critica.
  
     0.537
sce5569
Hypothetical protein.
  
     0.537
sce0202
Hypothetical protein predicted by Glimmer/Critica.
  
     0.536
sce7469
Hypothetical protein.
  
     0.525
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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