Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3226Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
sce8454
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.756
sce4966
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.755
sce1114
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.740
sce3542
Transcriptional regulator, LysR family; Function unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.737
sce8586
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.736
sce6754
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.728
sce7112
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.724
sce1423
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.710
sce1964
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.690
sce0992
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.681
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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