STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3239Superfamily II DNA and RNA helicase. (1124 aa)    
Predicted Functional Partners:
sce3238
Hypothetical protein.
 
     0.951
sce3242
Hypothetical protein; Type II restriction enzyme methylase subunits.
 
   
 0.884
sce3243
Hypothetical protein; Superfamily II DNA/RNA helicases SNF2 family.
 
   
 0.876
sce2194
Hypothetical protein; Type II restriction enzyme methylase subunits.
 
   
 0.799
sce3237
Phospholipase D/transphosphatidylase.
       0.794
sce8073
Unknown protein; Type II restriction enzyme methylase subunits.
 
   
 0.765
sce3240
No similarity.
       0.620
sce3241
Predicted ATP-binding protein involved in virulence.
       0.620
sce5771
Hypothetical protein; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
  
     0.473
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.