STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3254Putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (286 aa)    
Predicted Functional Partners:
fabG10
3-oxoacyl-[acyl-carrier-protein] reductase.
  
 
   0.644
sce6685
SDR family short chain oxidoreductase; Specificity unclear; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.625
fabG9
3-oxoacyl-[acyl-carrier-protein] reductase.
 
 
 
 0.617
sce4411
Putative secreted protein.
  
     0.612
sce3550
Hypothetical protein; FOG: TPR repeat.
  
     0.603
sce8810
Oxidoreductase, short-chain dehydrogenase/reductase family; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.600
sce8812
Probable short-chain dehydrogenase; Family membership.
  
 
   0.575
sce8666
Probable dehydrogenase; Family membership.
  
 
   0.556
sce3255
Uncharacterized protein conserved in bacteria.
       0.505
sce3225
Putatvie Dehydrogenase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.467
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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