Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trkA1Potassium uptake system protein, TrkA-family; High confidence in function and specificity. (227 aa)    
Predicted Functional Partners:
trkH
Potassium uptake protein, TrkH family; Specificity unclear.
 
 
 0.977
sun
Sun protein; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.684
himA
Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.613
moaE
Probably molybdopterin-converting factor chain 2; Family membership.
   
    0.605
sce3256
Hypothetical protein predicted by Glimmer/Critica.
       0.543
sce3257
Hypothetical protein.
       0.543
sce3258
Hypothetical protein predicted by Glimmer/Critica.
       0.543
sce3259
Periplasmic protein TonB links inner and outer membranes.
       0.543
hemD
Uroporphyrinogen-III synthase; Family membership.
  
  
 0.539
sce6449
Putative transcriptional regulator.
  
    0.508
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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