Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
trkHPotassium uptake protein, TrkH family; Specificity unclear. (649 aa)    
Predicted Functional Partners:
trkA1
Potassium uptake system protein, TrkA-family; High confidence in function and specificity.
 
 
 0.977
sce0124
Putative sodium:solute transport protein; Specificity unclear.
  
 
 0.858
trkA2
Potassium uptake system protein, TrkA-family; Specificity unclear.
  
 
 0.815
sce0244
Hypothetical protein; Kef-type K+ transport systems predicted NAD-binding component.
 
 
 0.805
mnhG
Na+/H+ antiporter; Family membership.
  
 
 0.797
CAN94176.1
Pseudogene.
  
 
 0.780
cotH
Spore coat protein H; Family membership.
       0.484
dacA
Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
  
   
 0.420
kefC
Glutathione-regulated potassium-efflux system protein KefC; High confidence in function and specificity; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.407
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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