STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkHPotassium uptake protein, TrkH family; Specificity unclear. (649 aa)    
Predicted Functional Partners:
trkA1
Potassium uptake system protein, TrkA-family; High confidence in function and specificity.
 
 
 0.980
sce0124
Putative sodium:solute transport protein; Specificity unclear.
  
 
 0.888
mnhG
Na+/H+ antiporter; Family membership.
  
 
 0.853
trkA2
Potassium uptake system protein, TrkA-family; Specificity unclear.
  
 
 0.845
sce0244
Hypothetical protein; Kef-type K+ transport systems predicted NAD-binding component.
 
 
 0.840
CAN94176.1
Pseudogene.
  
 
 0.820
cotH
Spore coat protein H; Family membership.
       0.484
atpB
H(+)-transporting two-sector ATPase; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
  
  
 0.459
kefC
Glutathione-regulated potassium-efflux system protein KefC; High confidence in function and specificity; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.406
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.