Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3298PE-PGRS family protein. (551 aa)    
Predicted Functional Partners:
sce1542
Putative protease inhibitor; Family membership.
  
     0.735
sce3119
Hypothetical protein; FOG: WD40 repeat.
  
     0.703
sce6861
Hypothetical protein similar to eukaryotic regulators / effectors.
  
     0.702
moaA1
Probable molybdenum cofactor biosynthesis protein A.
  
     0.693
sce2670
Hypothetical protein predicted by Glimmer/Critica.
  
     0.689
sce4558
Hypothetical protein.
  
     0.686
sce4929
Hypothetical protein; No COG number.
  
     0.639
sce5244
PE_PGRS family protein; Family membership.
  
     0.638
sce4532
Hypothetical protein; FOG: WD40 repeat.
  
     0.634
sce8129
Putative secreted protein.
  
     0.604
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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