STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3304Put. Xylosidase/arabinosidase. (805 aa)    
Predicted Functional Partners:
yagH
Beta-xylosidase (14-beta-D-xylan xylohydrolase) (Xylan 14-beta-xylosidase); High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.929
xynB4
Xylan 1,4-beta-xylosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.929
xylA
Xylose isomerase; High confidence in function and specificity; Belongs to the xylose isomerase family.
 
 
 0.893
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.885
galA
Arabinogalactan endo-1,4-beta-galactosidase; High confidence in function and specificity.
  
   
 0.691
celY
Cellulase; High confidence in function and specificity.
 
   
 0.681
xynA1
Endo-1,4-beta-xylanase; High confidence in function and specificity.
 
   
 0.650
sce6752
Hypothetical protein.
  
     0.650
xynB1
Endo-1,4-beta-glucanase; High confidence in function and specificity.
 
   
 0.644
sce1002
Putative glycosyl hydrolase; Family membership.
 
   
 0.616
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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