STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3308put.Periplasmic protein precursor; Family membership. (323 aa)    
Predicted Functional Partners:
sce3305
Put. Sugar transport system permease; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 0.997
sce2222
Sugar ABC transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.992
sce3306
put.Ribose/xylose/arabinose/galactoside ABC-type transport system permease; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 0.990
sce3307
Put. ATP-binding component of a transport system; Specificity unclear.
 0.990
sce2223
Put. Sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 0.986
sce2221
Unnamed protein product; Specificity unclear.
 0.975
sce8434
Two-component hybrid sensor and regulator; Family membership.
  
 
 0.973
sce3324
Transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 0.962
sce8828
Two-component hybrid sensor and regulator; Family membership.
  
 
 0.950
rbsC2
Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
 
 0.914
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.