Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3314Putative secreted protein. (474 aa)    
Predicted Functional Partners:
sce3313
Putative secreted protein.
       0.773
sce6114
Hypothetical protein predicted by Glimmer/Critica.
  
     0.729
mltD1
Murein transglycosylase; Family membership.
  
  
 0.580
sce4008
Hypothetical protein.
  
     0.564
sce3075
Hypothetical transferase.
  
     0.562
sce8063
Uncharacterized protein conserved in bacteria.
 
    0.535
sce7027
Putative secreted tripeptidyl aminopeptidase.
  
     0.517
sce7604
Putative secreted protein.
  
  
 0.514
sce0980
Putative transcriptional regulator.
 
   
 0.501
sce8533
Putative secreted protein.
 
     0.482
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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