Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3323Sugar ABC transporter ATP-binding protein; Specificity unclear. (506 aa)    
Predicted Functional Partners:
sce3322
Put. D-ribose-binding periplasmic protein; Specificity unclear.
 
 0.996
sce3324
Transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.994
rbsC4
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.982
sce3100
Sugar transport system permease; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.978
rbsC2
Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
 
 0.976
rbsC3
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 0.974
sce2222
Sugar ABC transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.876
sce2223
Put. Sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.876
sce3305
Put. Sugar transport system permease; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.838
sce3306
put.Ribose/xylose/arabinose/galactoside ABC-type transport system permease; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.807
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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