Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xdhHypothetical protein; High confidence in function and specificity. (554 aa)    
Predicted Functional Partners:
sce3337
[2Fe-2S]-binding protein.
 
  
 0.934
sce6334
Hypothetical protein predicted by Glimmer/Critica.
 
  
 0.882
sce5894
Hypothetical protein; COG: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
 
  
 0.880
sce3336
Putative Isoquinoline 1-oxidoreductase; Family membership.
 
  
 0.855
sce5895
Putative Xanthine dehydrogenase; Family membership.
 
  
 0.833
sce6333
Putative aldehyde dehydrogenase; Family membership.
 
  
 0.801
sce6329
Putative aldehyde dehydrogenase; Family membership.
 
  
 0.786
ygeT
Putative Xanthine dehydrogenase.
 
  
 0.765
sce5897
Hypothetical protein; Xanthine and CO dehydrogenases maturation factor XdhC/CoxF family.
 
  
0.679
moaA1
Probable molybdenum cofactor biosynthesis protein A.
 
  
 0.642
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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