sce3365 protein (Sorangium cellulosum So ce56)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sce3365

Putative sugar ABC transporter. (379 aa)

Predicted Functional Partners:

sce1402

0.971

rbsB2

0.956

sce3322

0.944

rbsB1

0.929

sce3102

0.928

sce1346

0.743

sce7776

0.743

rbsC2

0.742

sce7807

0.733

sce3507

0.731

Your Current Organism:

Sorangium cellulosum So ce56

NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rbsB1	rbsB2	sce4030	sce8240	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	0.972
rbsB1	rbsC2	sce4030	sce4028	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.	0.929
rbsB1	sce1346	sce4030	sce1346	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Hybrid histidine kinase; Family membership.	0.743
rbsB1	sce1402	sce4030	sce1402	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Sugar-binding protein; Specificity unclear.	0.963
rbsB1	sce3102	sce4030	sce3102	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	ABC-type sugar transport system, periplasmic component; Specificity unclear.	0.914
rbsB1	sce3322	sce4030	sce3322	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Put. D-ribose-binding periplasmic protein; Specificity unclear.	0.927
rbsB1	sce3365	sce4030	sce3365	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Putative sugar ABC transporter.	0.929
rbsB1	sce3507	sce4030	sce3507	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Two-component hybrid sensor and regulator; Family membership.	0.731
rbsB1	sce7776	sce4030	sce7776	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Two-component hybrid histidine kinase; Family membership.	0.743
rbsB1	sce7807	sce4030	sce7807	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Histidine kinase; Unnamed protein product; Family membership.	0.733
rbsB2	rbsB1	sce8240	sce4030	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	0.972
rbsB2	rbsC2	sce8240	sce4028	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.	0.817
rbsB2	sce1346	sce8240	sce1346	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Hybrid histidine kinase; Family membership.	0.743
rbsB2	sce1402	sce8240	sce1402	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Sugar-binding protein; Specificity unclear.	0.937
rbsB2	sce3102	sce8240	sce3102	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	ABC-type sugar transport system, periplasmic component; Specificity unclear.	0.974
rbsB2	sce3322	sce8240	sce3322	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Put. D-ribose-binding periplasmic protein; Specificity unclear.	0.924
rbsB2	sce3365	sce8240	sce3365	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Putative sugar ABC transporter.	0.956
rbsB2	sce3507	sce8240	sce3507	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Two-component hybrid sensor and regulator; Family membership.	0.731
rbsB2	sce7776	sce8240	sce7776	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Two-component hybrid histidine kinase; Family membership.	0.743
rbsB2	sce7807	sce8240	sce7807	Ribose transporter, periplasmic binding protein; High confidence in function and specificity.	Histidine kinase; Unnamed protein product; Family membership.	0.733

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About