STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3376ABC transport system substrate-binding protein; Specificity unclear. (346 aa)    
Predicted Functional Partners:
sce3378
ABC transporter permease protein.
  
 0.976
sce3377
ABC transport system ATP-binding protein; Specificity unclear.
 
  
 0.941
sce0166
ABC transporter permease protein; Specificity unclear.
 
  
 0.848
ssuC
Aliphatic sulfonate ABC transporter, membrane protein; High confidence in function and specificity.
 
  
 0.848
sce1322
ABC transporter permease protein; Specificity unclear.
 
  
 0.844
sce1323
ABC transporter permease protein.
 
  
 0.840
sce2758
Putative ABC transporter permease protein; Family membership.
 
  
 0.830
sce1863
Putative ABC-type permease protein; Family membership.
 
  
 0.829
sce4769
ABC-type transporter, permease protein; Specificity unclear.
  
 0.828
sce3375
Cytidine/deoxycytidylate deaminase.
       0.777
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.