STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3382Tra; Family membership. (329 aa)    
Predicted Functional Partners:
oruR1
Ornithine utilization regulator.
  
     0.757
sce6371
Transcriptional regulator, AraC family; Family membership.
  
     0.753
sce0709
Transcriptional regulator, AraC family; Family membership.
  
     0.745
sce6362
Transcriptional regulator, AraC family; Family membership.
  
     0.705
sce0553
Transcriptional regulator, AraC family; Family membership.
  
     0.699
rhaS
Transcriptional regulator, AraC family; Specificity unclear.
  
     0.671
sce6430
Transcriptional regulator, AraC family; Family membership.
  
     0.576
sce5287
Transcriptional regulator, AraC family; Family membership.
  
     0.565
sce0089
Transcriptional regulator, AraC family; Family membership.
  
     0.547
sce1410
Putative araC-like transcription regulator; Family membership.
  
     0.531
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.