STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3400IstB-like ATP-binding protein; Family membership. (122 aa)    
Predicted Functional Partners:
sce3397
IstB-like ATP-binding protein; Family membership.
 
     0.953
sce3401
IstB-like ATP-binding protein; Family membership.
     0.949
sce3403
Transposase; Family membership.
 
  
 0.918
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.800
sce2080
Transposase; Family membership.
 
  
 0.793
sce8773
Transposase; Family membership.
 
  
 0.792
sce6142
IstB-like ATP-binding protein; Family membership.
  
     0.775
sce3399
Putative O-Glycosyl hydrolase.
       0.741
sce3402
Putative transposase; Specificity unclear.
  
  
 0.658
sce3404
Hypothetical protein; FOG: TPR repeat.
       0.618
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.