Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3412GGDEF domain-containing protein; Unnamed protein product; Family membership. (329 aa)    
Predicted Functional Partners:
sce3413
Uncharacterized protein conserved in bacteria.
       0.773
sce3710
Sensory box/GGDEF family protein.
 
  
 0.628
sce1346
Hybrid histidine kinase; Family membership.
  
  
 0.579
sce7776
Two-component hybrid histidine kinase; Family membership.
  
  
 0.579
sce3411
Sigma-54 dependent transcriptional regulator; Family membership.
       0.552
sce3989
Protein kinase; Family membership.
  
  
 0.496
sce4309
Hybrid sensory histidine kinase; Family membership.
  
  
 0.473
sce4190
Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.457
sce1260
Two-component hybrid sensor and regulator; Family membership.
  
  
 0.436
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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