Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sce3417Putative short chain dehydrogenase; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (272 aa)    
Predicted Functional Partners:
fabG3
3-oxoacyl-[acyl-carrier-protein] reductase.
  
 
   0.719
sce8666
Probable dehydrogenase; Family membership.
  
 
   0.693
sce3451
Dehydrogenase; Family membership.
  
 
   0.670
fabG2
3-oxoacyl-[acyl-carrier-protein] reductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.596
sce3416
Hypothetical protein; FOG: PKD repeat.
       0.489
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.421
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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