Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3419Outer membrane protein. (632 aa)    
Predicted Functional Partners:
sce3418
Hypothetical protein predicted by Glimmer/Critica.
     
 0.806
sce5370
Fibronectin type III domain protein.
  
     0.770
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
  
   
 0.739
sce5338
Protein kinase; Family membership.
  
     0.720
sce8729
Protein kinase; Family membership.
  
     0.701
sce5533
Protein kinase; Family membership.
  
     0.674
sce8738
Protein kinase; Family membership.
  
     0.668
sce5317
Protein kinase; Family membership.
  
     0.666
sce4176
Protein kinase; Family membership.
  
     0.664
sce2349
Amidase; Family membership.
  
     0.649
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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