STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3440Membrane protein, putative. (829 aa)    
Predicted Functional Partners:
sce7432
Putative S-layer-like protein; Family membership.
  
     0.593
sce2849
Outer membrane efflux protein; Specificity unclear.
 
     0.541
sce0988
Putative secreted protein.
 
   
 0.528
sce3563
Hypothetical protein.
  
     0.526
sce0395
Putative outer membrane protein.
  
     0.521
sce7604
Putative secreted protein.
  
   
 0.498
sce8489
Hypothetical protein.
  
     0.493
sce2290
Hypothetical protein predicted by Glimmer/Critica.
  
   
 0.477
sce7934
Hypothetical protein.
  
     0.473
sce0637
Putative secreted protein.
  
     0.464
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.