Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
galE1UDP-glucose 4-epimerase; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (338 aa)    
Predicted Functional Partners:
galK
Galactokinase; High confidence in function and specificity; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.977
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
 
  
 0.943
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
  
 
 0.939
galM2
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.928
sce3087
Hypothetical protein.
    
 0.926
galE3
UDP-glucose 4-epimerase; High confidence in function and specificity.
 
 
0.925
galE2
GalE2 protein; High confidence in function and specificity.
 
 
0.919
sce6496
Epimerase domain-containing protein; Unnamed protein product; Family membership.
 
 
 0.918
sce4259
Hypothetical protein.
   
 0.907
galE4
GalE4 protein; High confidence in function and specificity.
   
 0.907
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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