Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3451Dehydrogenase; Family membership. (238 aa)    
Predicted Functional Partners:
sce9300
Dehydrogenases with different specificities (related to short-chain; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.759
sce8810
Oxidoreductase, short-chain dehydrogenase/reductase family; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.756
sce2001
Putative 3-oxoacyl-[acyl-carrier-protein] reductase.
  
     0.751
fabG6
3-oxoacyl-[acyl-carrier-protein] reductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.746
sce1683
Oxidoreductase, short-chain dehydrogenase/reductase family; Family membership.
  
 
   0.736
sce0805
Probable oxidoreductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.731
sce6685
SDR family short chain oxidoreductase; Specificity unclear; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.730
sce8812
Probable short-chain dehydrogenase; Family membership.
  
     0.724
fabG8
3-oxoacyl-[acyl-carrier-protein] reductase; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.721
fabG5
3-oxoacyl-[acyl-carrier-protein] reductase; Family membership.
  
     0.715
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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