STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide ABC transporter ATP-binding protein; Family membership; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport permease protein; High confidence in function and specificity.
  
 0.996
appC
Oligopeptide ABC transporter, permease component; Family membership.
  
 0.990
sce4300
Peptide ABC transporter, permease protein; Family membership.
  
 0.990
oppB2
Oligopeptide transport permease protein; Family membership.
 
 0.973
sce3647
Putative oligopeptide ABC transporter integral membrane protein.
  
 0.972
dppB
ABC transporter permease protein; Family membership.
 
 0.935
sce4301
Peptide ABC transporter, permease protein; Family membership.
 
 0.907
oppB1
ABC transport protein inner membrane component.
 
 
 0.905
sce3056
Put. Multiple sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.895
oppA2
Periplasmic oligopeptide-binding protein precursor.
 
  
 0.861
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.