Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3474Hypothetical protein; Fatty acid desaturase. (413 aa)    
Predicted Functional Partners:
sce3475
Hypothetical protein; Predicted hydrolase of the alpha/beta-hydrolase fold.
       0.561
sce3473
Hypothetical protein predicted by Glimmer/Critica.
       0.536
sce8975
Hypothetical protein.
  
     0.518
sce3726
Hypothetical protein.
  
     0.444
sce3910
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.443
sce6006
Sterol desaturase-related protein.
 
  
 0.442
sce9262
Hypothetical protein.
 
     0.428
sce1419
Putative membrane protein.
  
     0.419
sce0056
Hypothetical protein predicted by Glimmer/Critica.
  
     0.411
sce8909
Hypothetical protein.
  
     0.409
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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