Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3478Fatty acid desaturase; Specificity unclear. (327 aa)    
Predicted Functional Partners:
ugcG
Ceramide glucosyltransferase; High confidence in function and specificity.
  
  
  0.921
sce4410
Hypothetical protein.
  
  
  0.918
srfJ
Glucosylceramidase (O-glycosyl hydrolase); Specificity unclear; Belongs to the glycosyl hydrolase 30 family.
  
  
  0.913
sce4676
Probable short-chain dehydrogenase/reductase family protein; Specificity unclear; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
  0.900
mvaB
Hydroxymethylglutaryl-CoA lyase.
 
     0.776
fbp1
Fructose-2,6-bisphosphate 2-phosphatase; High confidence in function and specificity.
  
     0.721
sce3951
Hypothetical protein predicted by Glimmer/Critica.
 
  
 0.585
sce3479
Transcriptional regulator, TetR family; Family membership.
  
    0.566
sce3725
ChaC-like family protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
  
     0.557
sce7695
Putative RNA lariat debranching enzyme.
  
     0.540
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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