STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chdhCholine dehydrogenase; Family membership. (522 aa)    
Predicted Functional Partners:
betC
Choline sulfatase; High confidence in function and specificity.
 
  
 0.678
nirB1
Nitrite reductase; High confidence in function and specificity; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.531
sce3487
Hypothetical protein predicted by Glimmer/Critica.
       0.516
sce3489
Nitrite reductase small subunit, probable.
       0.503
sce3726
Hypothetical protein.
  
     0.487
nos
Nitric-oxide synthase, oxygenase subunit; Family membership.
 
   
 0.483
ethA
Monooxygenase, flavin-binding family; High confidence in function and specificity.
 
  
 0.428
sce3485
Hypothetical protein.
       0.420
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.