Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3494ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily. (212 aa)    
Predicted Functional Partners:
sce7221
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.772
sce8680
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.772
sce8793
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.770
tif2
ECF-family RNA polymerase sigma factor; COG: Membrane carboxypeptidase (penicillin-binding protein); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.769
sce6054
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.769
sce8897
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
sce4969
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.767
sce6468
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.766
sce1340
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.765
sce6659
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.765
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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