STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3511Putative membrane protein. (338 aa)    
Predicted Functional Partners:
yniI
Hypothetical protein.
 
    
0.849
sce7749
Hypothetical protein predicted by Glimmer/Critica.
  
     0.708
sce3651
Hypothetical protein.
  
     0.693
sce4169
Hypothetical protein.
  
     0.588
sce9048
Hypothetical protein; SAM-dependent methyltransferases.
  
     0.576
sce3510
Hypothetical protein predicted by Glimmer/Critica.
       0.565
sce1279
Hypothetical protein.
  
     0.564
sce3509
General stress protein.
       0.516
sce0678
Hypothetical protein predicted by Glimmer/Critica.
  
     0.512
sce3513
Putative hydrolase; Family membership.
       0.506
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.