Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3519Putative secreted protein. (202 aa)    
Predicted Functional Partners:
sce7021
Hypothetical protein/putative endoglucanase; Function unclear.
  
     0.572
sce1896
Putative esterase.
  
     0.565
sce5350
Putative secreted protein.
  
     0.564
sce8533
Putative secreted protein.
  
     0.558
sce3414
Putative secreted lyase.
  
     0.557
sce7853
Exported O-glycosyl hydrolase; Family membership.
  
     0.553
sce7850
Alpha-L-arabinofuranosidase precursor; Family membership.
  
     0.548
pcxB
Dioxygenase.
  
     0.539
sce8862
BKRF1 encodes EBNA-1 protein, latent cycle gene.
  
     0.532
abfB
Alpha-L-arabinofuranosidase precursor; High confidence in function and specificity.
  
     0.530
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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