STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3533Peptidase, M23/M37 family. (356 aa)    
Predicted Functional Partners:
sce7974
Putative exported peptidase; Family membership.
 
   
 0.725
sce0331
Hypothetical protein; Function unclear.
  
   
 0.557
pbp1
Penicillin-binding protein.
  
   
 0.551
lepB1
Signal peptidase I; High confidence in function and specificity; Belongs to the peptidase S26 family.
 
  
 0.537
lepB2
Signal peptidase I; Specificity unclear; Belongs to the peptidase S26 family.
 
  
 0.534
deaD2
DeaD2 protein; High confidence in function and specificity; Belongs to the DEAD box helicase family.
     
 0.446
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
  
   
 0.417
sce3534
Hypothetical protein predicted by Glimmer/Critica.
       0.415
sce6480
Putative exported peptidase; Function unclear.
 
   
0.403
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.