Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3534Hypothetical protein predicted by Glimmer/Critica. (133 aa)    
Predicted Functional Partners:
sce0315
Hypothetical protein; No COG number.
  
     0.675
chlG
Putative Octaprenyltransferase; Family membership.
  
     0.674
sce6067
Porin P precursor (Outer membrane protein D1); Family membership.
  
     0.566
sce8912
Transcriptional regulator, AraC family; Family membership.
  
     0.551
sce1965
Hypothetical protein predicted by Glimmer/Critica.
  
     0.550
sce9138
Hypothetical protein.
  
     0.533
sce9256
Putative secreted protein.
  
     0.533
sce3535
Hypothetical protein predicted by Glimmer/Critica.
       0.529
sce3055
Hypothetical protein with NDP-sugar oxidoreductase domain; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
     0.519
sce7854
Protein kinase; Family membership.
  
     0.502
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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