Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3542Transcriptional regulator, LysR family; Function unclear; Belongs to the LysR transcriptional regulatory family. (105 aa)    
Predicted Functional Partners:
sce3450
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
   
 0.788
ptxR
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.770
sce1964
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.769
sce2273
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.769
oxyR
Activator, hydrogen peroxide-inducible genes; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.768
sce0954
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.767
sce8818
Mau operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.767
sce4766
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.766
sce4966
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.764
sce5425
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.762
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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