STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3545Conserved carbohydrate-binding protein, Rhs family; Family membership. (557 aa)    
Predicted Functional Partners:
sce0111
Conserved exported carbohydrate-binding protein,Rhs family; Function unclear.
 
     0.789
sce6981
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.629
sce6980
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.595
sce6901
Hypothetical protein.
  
     0.531
gnd1
Phosphogluconate dehydrogenase; High confidence in function and specificity.
       0.515
sce6982
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.461
sce6984
RhsA protein precursor.
  
     0.457
sce3022
Hypothetical protein.
  
    0.411
sce4988
Uncharacterized protein conserved in bacteria.
  
    0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.