Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce3594Hypothetical protein; Putative Arylsulfatase A and related enzymes. (1161 aa)    
Predicted Functional Partners:
yfgL
Hypothetical protein yfgL.
 
     0.828
sce8140
Hypothetical protein predicted by Glimmer/Critica.
  
    0.750
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.741
sce0423
Putative membrane protein.
  
     0.717
sce2531
Putative secreted protein.
  
     0.709
sce7289
Hypothetical protein; FOG: WD40 repeat.
  
     0.705
sce1107
Hypothetical protein.
  
     0.699
sce3593
Hypothetical protein predicted by Glimmer/Critica.
       0.699
sce2916
Hypothetical protein predicted by Glimmer/Critica.
 
 
   0.686
sce7634
Hypothetical protein.
  
     0.686
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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